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Citation#

How to cite BacDive#

When using BacDive for research, please cite the newest database paper:

Schober I., Koblitz J., Sardà Carbasse J., Ebeling C., Schmidt M.L., Podstawka A., Gupta R., Ilangovan V., Chamanara J., Overmann J. and Reimer L.C. (2025) BacDive in 2025: the core database for prokaryotic strain data. Nucleic Acids Res 53(D1): D748–D756. DOI: 10.1093/nar/gkae95

List of Publications#

Koblitz J., Reimer L.C., Pukall R. and Overmann J. (2025) Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. Commun Biol 8(1): 897. DOI: 10.1038/s42003-025-08313-3

Schober I., Koblitz J., Sardà Carbasse J., Ebeling C., Schmidt M.L., Podstawka A., Gupta R., Ilangovan V., Chamanara J., Overmann J. and Reimer L.C. (2025) BacDive in 2025: the core database for prokaryotic strain data. Nucleic Acids Res 53(D1): D748–D756. DOI: 10.1093/nar/gkae95

Reimer L.C., Sardà Carbasse J., Koblitz J., Ebeling C., Podstawka A. and Overmann J. (2022) BacDive in 2022: the knowledge base for standardized bacterial and archaeal data. Nucleic Acids Res 50(D1): D741-D746. DOI: 10.1093/nar/gkab961

Reimer L.C., Vetcininova A., Sardà Carbasse J., Sohngen C., Gleim D., Ebeling C. and Overmann J. (2019) BacDive in 2019: bacterial phenotypic data for High-throughput biodiversity analysis. Nucleic Acids Res 47(D1): D631-D636. DOI: 10.1093/nar/gky879

Reimer L.C., Sohngen C., Vetcininova A. and Overmann J. (2017) Mobilization and integration of bacterial phenotypic data-Enabling next generation biodiversity analysis through the BacDive metadatabase. J Biotechnol 261: 187-193. DOI: 10.1016/j.jbiotec.2017.05.004

Söhngen C, Podstawka A, Bunk B, Gleim D, Vetcininova A, Reimer LC, Ebeling C, Pendarovski C, Overmann J. (2016) BacDive - The Bacterial Diversity Metadatabase in 2016. Nucleic Acids Res 44(D1): D581-5. DOI: 10.1093/nar/gkv983

Söhngen C, Bunk B, Podstawka A, Gleim D, Overmann J. (2014) BacDive - the Bacterial Diversity Metadatabase. Nucleic Acids Res 42(D1): D592-599. DOI: 10.1093/nar/gkt1058